| Part 1: Introduction to Functional Modeling | ||
| 8:00-8:30 | What's in it for me? | Shane Burgess |
| Published examples of how we have used the GO to functionally model large, agricultural datasets. | ||
| 8:30-9:15 | Getting started: a would-be user's introduction to GO. | Fiona McCarthy |
| What you need to know to use the GO. | ||
| 9:15-10:00 | Getting GO. Examples Using the GO browsers and GORetriever.Requesting more GO annotations. |
Fiona McCarthy |
| 10:00-10:30 | Break - refreshments in atrium | |
| 10:30-11:30 | GO enrichment analysis and introduction to networks. | Bindu Nanduri |
| Pathway analysis. | Bindu Nanduri | |
| 11:30-12:00 | Review of functional modeling resources and question time. | |
| 12:00-1:00 | Lunch Break - on your own | |
| Part 2: Tools for Functional Modeling | |||
| 1:00-4:00 | Examples of online tools for GO modeling, pathway analysis and network modeling. Working on your datasets. |
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| Overview of Functional Modeling Strategy | |||
| Using AgBase tools | |||
| Datasets for Functional Modeling | |||
| Resources for Functional Modeling | |||
| 1. Converting accessions between databases | |||
| 2. GO browsers | |||
| 3. Tools for GO analysis of gene expression/microarray data | |||
| 4. Pathway analysis | |||
| 5. GO enrichment analysis | |||
| 6. Websites used during this workshop | |||
| 7. Useful References | |||