GORetriever
| READ ME: | GO Retriever takes a list of IDS as input, and retrieves their GO annotations. The user can get GO annotations from a specific organism or from several. To speed up the process, please select a specific database. |
| For example: |
Database: ChickGO Accession Type: Uniprot ID File Content: 41_chick tom1_chick |
Select a database, accession type and file to upload.
Database selections can be "All AgBase Databases and GO" or specific species related databases.
Accession type options are ID Not Specified, UniProt ID, UniProt Accessions, GenBank Accessions, Interpro ids, GI num, GO ID
Submitting this form results in this page with links to more information and a small table containing the Uniprot ID, Protein Name, Gene Name, Molecular Weight, and Sequence Length for each organism:
Additionally, following the links in the table will lead to an entry detail page with information about the Name and Organism, Sequence, GO Annotations, and Database Cross-References.
The first link on the page, "View GO Annotation File in Excel Format," generates an Excel table containing Go Annotations for the specified organisms.
The table's columns designate the Database name, the Uniprot Accession, the Uniprot ID, the GO ID, and GO ID Description, the GO ID's database of origin, the EVD Code, an alternate database cross-reference, the GO Type, the object type, the Taxon ID, the date of last update, and the Assigned by Database.
The second link, "View ID List without GO annotation," shows a list of IDs that do not have GO annotations - for the example input, this should generate an empty document.
The third link, "GO annotation for running GO Slim Viewer," generates a text file suitable for being used as input into our GOSlimViewer tool. It contains a table with the Uniprot Accession, GO ID, and GO Type.
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