GO Slim Viewer
| README: |
GOSlimViewer is used to provide a high level summary of functions for a dataset. It is designed to use output generated by GORetriever. Note that you can add additional annotations that come from GOAnna (or other sources) to the GORetriever file. GOSlimViewer currently only supports the listed GOSlim sets.
To view a sample input file for GOSlimViewer click here. The output of GOSlimViewer is a text file that can be charted in Excel to obtain publication quality figures. Note that records without annotation are not analyzed by GOSlimViewer. Information about the GOSlim datasets available in AgBase can be found here. More information about the tool can be found here. |
Once the file has been prepared and the GO Slim Set selected, you can then select to view cellular components, molecular functions, biological processes, or view accessions(detail) for each slim id.
The first link "View Cellular Component" has been selected, and this table shows the GO ID, the cellular component, and how many of each there were.
The last link "View accessions for each slim id" has been selected. It will show how the GO IDs and the Slim IDs correspond by aspect. There is also a text only version of this data that you can click.
The "View accessions for each slim id text only" link has been selected.
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